PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00898.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 578aa    MW: 65385.6 Da    PI: 5.0712
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00898.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3438.18.2e-134384051351
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                              e+l++rmwkd+++lkr+ker+k   + ++  ++++  +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g
  Rsa1.0_00898.1_g00013.1  38 EDLERRMWKDRVRLKRIKERQKGDSQGAQ--AKEAAPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSG 121
                              89********************9775555..5666788************************************************ PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS
                     EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172
                              +sd++raWWkekv+fd+ngpaai+ky+ ++l++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPW
  Rsa1.0_00898.1_g00013.1 122 SSDNIRAWWKEKVKFDKNGPAAIAKYEEECLAFGKSDGN----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPW 203
                              *********************************987777....77999************************************** PP

                              ---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S- CS
                     EIN3 173 WPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekeca 258
                              WPtGke+ww +lgl+++q+ ppy+kphdlkk+wkv+vLtavi+hmsp+i++i++++rqsk+lqdkm+akes+++l+vlnqee++++
  Rsa1.0_00898.1_g00013.1 204 WPTGKEEWWVKLGLPQNQS-PPYRKPHDLKKMWKVGVLTAVINHMSPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQ 288
                              ******************9.9***************************************************************** PP

                              -XXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX..........XXXXXXXXXXXX..XXXXXX CS
                     EIN3 259 tvsahss............slrkqspkvtlsceqkedvegkkeskikhvqavktta..........gfpvvrkrkkkp..sesakv 320
                              + s+++               + +++k+++++++++dv+g++e + + ++++++++          + pv ++ k+++  ++++  
  Rsa1.0_00898.1_g00013.1 289 QPSSDNGttsnvtethrrgGNNADRRKTVINSDSDYDVDGTEEASGSVSSKESRRNqvqkeqpaatSQPVRDQDKAEKhrRRKRPR 374
                              *****444456888655543334889999**********66666655555555544566666666733343333333300333344 PP

                              XXX......XXXXXXX.XXXXXXXXXXXXXX CS
                     EIN3 321 sskevsrtcqssqfrgsetelifadknsisq 351
                                ++++ + q ++ ++ e++++++d+n+++ 
  Rsa1.0_00898.1_g00013.1 375 IRSGTVDNVQDEEQPEAEQRNVIPDMNHVDA 405
                              45566788899999999**********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.4E-12638284No hitNo description
Gene3DG3DSA:1.10.3180.102.9E-71160292IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.41E-61165287IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MGRDDLALSV ADIRMENEQP DDLASAEIDV SDEEIDAEDL ERRMWKDRVR LKRIKERQKG  60
DSQGAQAKEA APKKISDQAQ RKKMSRAQDG ILKYMLKLME VCKVRGFVYG IIPEKGKPVS  120
GSSDNIRAWW KEKVKFDKNG PAAIAKYEEE CLAFGKSDGN RNSQFVLQDL QDATLGSLLS  180
SLMQHCDPPQ RKYPLEKGTP PPWWPTGKEE WWVKLGLPQN QSPPYRKPHD LKKMWKVGVL  240
TAVINHMSPD IAKIKRHVRQ SKCLQDKMTA KESAIWLAVL NQEESLIQQP SSDNGTTSNV  300
TETHRRGGNN ADRRKTVINS DSDYDVDGTE EASGSVSSKE SRRNQVQKEQ PAATSQPVRD  360
QDKAEKHRRR KRPRIRSGTV DNVQDEEQPE AEQRNVIPDM NHVDAPMLDY NINGAHHHEE  420
GVSEPNLALG PEENGLELVI PEFDNNYTYL PPVDERPMLY GPNPNQELQF GSGYNYYNPS  480
AVFVHNQEED LLHTQIEMNS QAPLHNNGFE APGVLQPHGN EEGVAGRDMP PQFQSDQDKL  540
LDSNILSPFN DLAFDSSTFY SGFDSYGAFD DDYSWFGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-841642959140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00898.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456872.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A3P6BXU70.0A0A3P6BXU7_BRACM; Uncharacterized protein
STRINGBra015970.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]