PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00896.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 415aa MW: 47460.1 Da PI: 5.9715 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.2 | 2.5e-14 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n+s r+ t+ kR++g+lKK EL +LCd++ + +i+s+ + Rsa1.0_00896.1_g00015.1 11 ISNDSVRKRTLNKRKKGLLKKLDELKILCDVDMCAVIYSPYN 52 9**************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.942 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-20 | 4 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-14 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MTGKKLNLAY ISNDSVRKRT LNKRKKGLLK KLDELKILCD VDMCAVIYSP YNSTPEVWPS 60 NSEVHKVMEK FEKVPEEERT KRLVNHEEYL IQAITKVKSK IQRLTEDNND KLMKELMFAR 120 LNEDMGDLAI DDSNRGILCE FIDGYLRKVY HHRNVALKDL HLETGESSSM AMAMDMPPIA 180 MAEAGSSSFF NSPQQTNEFQ PLVTLNYGPE HISSHGSQSL NVPTFNFSQQ TNEVQPTISS 240 NQGVEHVHYL GKNFMSAPIF NSPRLTNELQ PLVTSNQGLE HNSSHGSQFL NVPTFKFSQQ 300 TNEVQPTISS NQGLEHVYSL GNNFMNAPIF NPPQQTNEIQ QPIISSNQEA NHVESLASDL 360 FPFSNHGVNT QVMNQDEVHY PLNQQDWHDE EMMKHSQQAC FPWMEENNHY NHHQL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 31 | RKRTLNKRKKGLLKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00896.1_g00015.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018441124.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A398AZQ6 | 0.0 | A0A398AZQ6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FGM0 | 0.0 | M4FGM0_BRARP; Uncharacterized protein | ||||
STRING | Bra040248.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 8e-54 | AGAMOUS-like 46 |