PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00835.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 37715.8 Da PI: 4.7189 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.3 | 2.9e-10 | 21 | 132 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 de ++ yL+ ++ + e ++ ++++++ +P++ ++e+ + F+ ++ r+ +sg W+ g+dk ++++ Rsa1.0_00835.1_g00007.1 21 DEKTMSIYLQSMKDSGDSWPEYFFGDTNLFTKNPSEVL----ESENPFFVFVYPITE--ACGRTDG-CDSGGWRIIGRDKLIKDEe 99 77788888888777666444456999999999999985....233444555554443..3345555.47899***********987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ g kk+L f +++ +g k +Wvm+++rl Rsa1.0_00835.1_g00007.1 100 TGKILGFKKILKFCGETKARGYKRTWVMEQFRL 132 78889*********99***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.119 | 11 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.42E-21 | 20 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-5 | 20 | 132 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.35 | 175 | 324 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-17 | 191 | 322 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEEIRVAKSA YTKDDHSKAN DEKTMSIYLQ SMKDSGDSWP EYFFGDTNLF TKNPSEVLES 60 ENPFFVFVYP ITEACGRTDG CDSGGWRIIG RDKLIKDEET GKILGFKKIL KFCGETKARG 120 YKRTWVMEQF RLPSKWNPKQ DHVVCKIQLL FQTEISYLLA KHFSYSSDLL PPTQSLPAYG 180 VCLANPQDDG AYHLQTIFDS VGNKWPSYVT NDVYCVHPST LVDHKDMRFL ESGLCIFADQ 240 TEDCGYTDGC ESGRWRIMEE HDAIYSMSYE VMGYRRVFKF CEEDEDKFFD IENGEEVLLT 300 WIMEEYRLVE EAMKDKVLCV IKLCR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00835.1_g00007.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438492.1 | 0.0 | PREDICTED: uncharacterized protein LOC108810920 | ||||
TrEMBL | A0A3P6FTR4 | 0.0 | A0A3P6FTR4_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g091580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60280.1 | 1e-112 | NAC domain containing protein 23 |