PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00832.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 23316.6 Da PI: 4.734 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.9 | 6.2e-42 | 36 | 134 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++s+vyeA ar+rdP+yG++g i +lq+q Rsa1.0_00832.1_g00013.1 36 PCAACKILRRRCGDKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRTDAVNSMVYEAGARIRDPIYGCAGAIYNLQRQ 121 7************************************************************************************* PP DUF260 87 leqlkaelallke 99 +++l+a+la+ + Rsa1.0_00832.1_g00013.1 122 VSELQAQLAKSQV 134 ********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.926 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-41 | 36 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MLDMEIKCDA SAAIVSASPT SSPPLPQLSP RLVLSPCAAC KILRRRCGDK CVLAPYFPPT 60 EPAKFTIAHR VFGASNIIKL LQELPESQRT DAVNSMVYEA GARIRDPIYG CAGAIYNLQR 120 QVSELQAQLA KSQVEIVSMQ LQRSNLLELI HNMDQPNQEQ HNMSFDSSFG NCDEFINSPD 180 EESNDFGFLE DNKYSNTKAS MLWCDPLWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-41 | 35 | 137 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-41 | 35 | 137 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00832.1_g00013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480879.1 | 1e-154 | PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 1e-102 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A291LQX5 | 1e-135 | A0A291LQX5_BRARR; Transcription factor LBD1a | ||||
STRING | Bra018675.1-P | 1e-133 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-101 | LOB domain-containing protein 11 |