PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00826.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 88aa    MW: 9840.02 Da    PI: 4.3077
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00826.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.38.5e-131312151
                             HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                             +KKA+ELS+LCda+v  i+fsstg +y +ss
  Rsa1.0_00826.1_g00011.1  1 MKKANELSILCDAKVGDIVFSSTGMVYYFSS 31
                             8**************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003197.9E-10129IPR002100Transcription factor, MADS-box
SMARTSM004320.0047132IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.904133IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-13144IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MKKANELSIL CDAKVGDIVF SSTGMVYYFS SEGMEHILSK YGYSAATSGH RQKEEQQLLL  60
CSSQDNGDLL WTDESLTSEL ERLQLAIE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00826.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438874.12e-58PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ9M2K83e-30AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A078H2B32e-41A0A078H2B3_BRANA; BnaC04g24260D protein
STRINGBo4g111230.14e-40(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3748322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-32AGAMOUS-like 18