PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00816.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 320aa MW: 35863.4 Da PI: 4.7095 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.9e-15 | 30 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+++++ +++ G++ W++Iar+++ +Rt++++k++w+++l Rsa1.0_00816.1_g00003.1 30 RGEFSYEEEQIIIMLHASRGNK-WSAIARHLP-KRTDNEVKNYWNTHL 75 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.321 | 1 | 24 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-11 | 10 | 36 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.07E-21 | 10 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.925 | 25 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 29 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-14 | 30 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-10 | 32 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 37 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVQSAYLGLK RCGKSCRLRW ANYLKPDIKR GEFSYEEEQI IIMLHASRGN KWSAIARHLP 60 KRTDNEVKNY WNTHLKKRLL DQGIDPLTHK PLASNPNPAT PTTSEGQDDS NPNLDEQSQS 120 GSMSPKSLPI SSSSCSLQKI SNSDETPRNN GSLSSNKCRF KKSSSTSKLL NKVATKASSI 180 GNMVSASMEG SLIRSTTFSP CLNDVFSETS QFQMDEFAPF SHSSDQHITD HMNEDINMDF 240 DLSNSEFSFS QFIEQFSNIE AEEANAIGGY NQDLLLSDVS STSVDEDNMM QNITGWSNYL 300 VDDSDFSYDT NQDFDDKNFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-18 | 11 | 79 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-18 | 11 | 79 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-18 | 11 | 79 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00816.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by gibberellic acid (GA), jasmonic acid (JA, MeJA), nitrogen starvation and UV LIGHT treatment. Transiently repressed by salicylic acid (SA). Accumulates upon mechanical stimuli (e.g. wounding) in inflorescence. Down-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444065.1 | 0.0 | PREDICTED: transcription factor MYB29-like | ||||
Swissprot | Q9FLR1 | 1e-149 | MYB29_ARATH; Transcription factor MYB29 | ||||
TrEMBL | A0A397XT60 | 0.0 | A0A397XT60_BRACM; Uncharacterized protein | ||||
STRING | Bo9g175680.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3787 | 18 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07690.1 | 1e-112 | myb domain protein 29 |