PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00815.1_g00011.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 326aa MW: 37515 Da PI: 6.5981

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00815.1_g00011.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.2	3.3e-49	6	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp + + +++ +w+fF++rd+ky++g+r nratksgyWk Rsa1.0_00815.1_g00011.1 6 LPPGFRFHPTDEELVGYYLHRRNEGLEIEL-EIIPLMDLYKFDPWELPeQsFLPNRDMQWFFFCHRDRKYQNGSRINRATKSGYWK 90 79**************************.99**********95345556888************************ PP NAM 85 atgkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 atgkd++++++ + g++ktLvfy grap g +t+W mheyrl Rsa1.0_00815.1_g00011.1 91 ATGKDRNIICQssS--SssspiSGCRKTLVFYLGRAPFGGRTEWAMHEYRL 139 ******8551..3455669************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-55	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	55.012	6	163	IPR003441	NAC domain
Pfam	PF02365	8.3E-27	7	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MARSYLPPGF RFHPTDEELV GYYLHRRNEG LEIELEIIPL MDLYKFDPWE LPEQSFLPNR 60 DMQWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRNIIC QSSSSSSSPI SGCRKTLVFY 120 LGRAPFGGRT EWAMHEYRLF DNDSSEKSRN FKGDFALCRV VKRNEVTLKK CEASSLEVPD 180 DPLANNVDIP CKARYTGTGS CDAHNTLQAS PDFILESSTK GNSQSQTEEN SGFQVFALPE 240 FEYPLEFFAD LNFDRGLENP FTFVNYQEAH VNDEVINYGF AQTNPTMPTA THVFLRFNAS 300 PGGHRMSNPG RFLFGAYHWA TMKWLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-46	6	169	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-46	6	169	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-46	6	169	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-46	6	169	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-46	6	169	20	174	NAC domain-containing protein 19
3swm_B	4e-46	6	169	20	174	NAC domain-containing protein 19
3swm_C	4e-46	6	169	20	174	NAC domain-containing protein 19
3swm_D	4e-46	6	169	20	174	NAC domain-containing protein 19
3swp_A	4e-46	6	169	20	174	NAC domain-containing protein 19
3swp_B	4e-46	6	169	20	174	NAC domain-containing protein 19
3swp_C	4e-46	6	169	20	174	NAC domain-containing protein 19
3swp_D	4e-46	6	169	20	174	NAC domain-containing protein 19
4dul_A	4e-46	6	169	17	171	NAC domain-containing protein 19
4dul_B	4e-46	6	169	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00175	DAP	Transfer from AT1G32510	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00815.1_g00011.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	1e-73	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F5D14	1e-73	AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449878.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	O49697	7e-86	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A0D3DKT5	1e-177	A0A0D3DKT5_BRAOL; Uncharacterized protein
STRING	Bo8g028730.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15029	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32510.1	1e-147	NAC domain containing protein 11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]