PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00796.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 302aa MW: 34194.7 Da PI: 6.5577

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00796.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.2	2.9e-27	109	170	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+YYrCt++ gC+++k+v+rs+e++ ++ei Y+g H ++ Rsa1.0_00796.1_g00007.1 109 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSNENQMLFEISYRGIHSCS 170 59*************************98889***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	21.609	104	168	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.9E-26	106	171	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-24	108	171	IPR003657	WRKY domain
SMART	SM00774	7.6E-39	109	171	IPR003657	WRKY domain
Pfam	PF03106	4.4E-25	110	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MKKEIHELMT EGIDYAHQLK SQLGSSSSDL ESREHLAKKI LESYHKSLTI MNHSGELEQV 60 SPHIHGGGSP KSDDSDQEHH QTITSSKKSM PRWTEKVRIT PGVEIDRMLD DGFSWRKYGQ 120 KDILGAKFPR GYYRCTYRKS QGCEATKQVQ RSNENQMLFE ISYRGIHSCS QAANVRSAIP 180 VRVLEPDQTQ GHENLEMVKE SLDTDNHNYN HQPHLHQSMQ YPLSSTPTLE SNNMMLQLRD 240 QNIDFFGSTS FSSDLGANVN YDYLASHNVG SVSHSTSNSP SESPFESFDP NNPFKGFGGF 300 YS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-19	109	167	14	74	Disease resistance protein RRS1
5w3x_D	3e-19	109	167	14	74	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SUP6}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00796.1_g00007.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:22268143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430047	0.0	KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481348.1	0.0	PREDICTED: probable WRKY transcription factor 30
Swissprot	Q9FL62	1e-149	WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBL	A0A0D3DD66	0.0	A0A0D3DD66_BRAOL; Uncharacterized protein
STRING	Bo7g097170.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12595	19	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	1e-140	WRKY DNA-binding protein 30

Publications ? help Back to Top
Jiang W,Wu J,Zhang Y,Yin L,Lu J Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses. Protoplasma, 2015. 252(5): p. 1361-74 [PMID:25643917] Kanofsky K,Bahlmann AK,Hehl R,Dong DX Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters. Plant Cell Rep., 2017. 36(6): p. 971-986 [PMID:28341984]