PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00795.1_g00010.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SAP

Protein Properties

Length: 82aa MW: 8197.06 Da PI: 4.4263

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00795.1_g00010.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	81.3	1.3e-25	1	79	1	79
SAP 1 mssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfqv 79 msssss+s++ +++g ++ + ++s+g +e+ps sr+r +an+vwpePfle+la+qva+das s+G + aa+alan+f+v Rsa1.0_00795.1_g00010.1 1 MSSSSSASDNGNSSGGLSSVA-GRSGGVFEAPSPSRPRhSANDVWPEPFLESLAVQVAVDASLSAGLVDAAPALANIFRV 79 899999888888877655554.67789********9899************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MSSSSSASDN GNSSGGLSSV AGRSGGVFEA PSPSRPRHSA NDVWPEPFLE SLAVQVAVDA 60 SLSAGLVDAA PALANIFRVL VL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00795.1_g00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018459706.1	5e-36	PREDICTED: transcriptional regulator STERILE APETALA
Swissprot	Q9FKH1	7e-20	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A0D3BZ88	5e-36	A0A0D3BZ88_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6QFD7	5e-36	A0A3N6QFD7_BRACR; Uncharacterized protein
STRING	Bo4g135860.1	9e-37	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24056	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	3e-21	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]