PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00784.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28753.4 Da PI: 7.6618 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.7e-08 | 32 | 76 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+eE + + +a + ++ + +W +Ia++++ g+t ++ + k Rsa1.0_00784.1_g00009.1 32 WTKEENKMFERALAIYPEDspdRWFKIASMIP-GKTVFDVMKQYSK 76 ********************************.***9999888876 PP | |||||||
2 | Myb_DNA-binding | 40 | 9.3e-13 | 124 | 168 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky Rsa1.0_00784.1_g00009.1 124 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 168 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.283 | 27 | 80 | IPR017884 | SANT domain |
SMART | SM00717 | 7.9E-9 | 28 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.45E-12 | 30 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-4 | 31 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.6E-7 | 32 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-8 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 19.641 | 117 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.07E-15 | 119 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 120 | 172 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-10 | 121 | 171 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-11 | 121 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.91E-9 | 124 | 168 | No hit | No description |
Pfam | PF00249 | 4.0E-10 | 124 | 168 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
METLNPLSHV PISDYRSVGQ DMVSLQSSSS IWTKEENKMF ERALAIYPED SPDRWFKIAS 60 MIPGKTVFDV MKQYSKLEED VFDIEEGRVP IPGYPSPLGF TQDTCRKRPN GARGSDHERK 120 KGVPWTEEEH RRFLLGLLKY GKGDWRNISR NFVVSKTPTQ VASHAQKYYQ RQLSGAKDKR 180 RPSIHDITTV NLLNANLNRS FSDHRDILPD LGFIENDKAE EGLMCMSQNL FSPSSAPFDA 240 AFNFAGVNAF SAGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-17 | 22 | 99 | 1 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00347 | DAP | Transfer from AT3G11280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00784.1_g00009.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY056180 | 0.0 | AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds. | |||
GenBank | AY091265 | 0.0 | AY091265.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds. | |||
GenBank | AY550308 | 0.0 | AY550308.1 Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486961.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 6e-71 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3P6FWT8 | 0.0 | A0A3P6FWT8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g136680.1 | 1e-180 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4340 | 26 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 1e-157 | MYB family protein |
Publications ? help Back to Top | |||
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