PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00760.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 33663.5 Da PI: 5.9486 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65 | 2.2e-20 | 5 | 81 | 3 | 75 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrkn 75 +G+rF Ptdee+v++yL+ k +g + ++++vi++++i++++PwdLp+ k++++++ wyfF ++++ky++g+r++ Rsa1.0_00760.1_g00008.1 5 VGLRFLPTDEEIVDHYLRLKNNGGPntSHVDQVISTLNICNFDPWDLPQksKIESSNQVWYFFGRKESKYKKGNREK 81 7*********************99976677789**************95357777888**************99975 PP | |||||||
2 | NAM | 25.5 | 3.7e-08 | 79 | 106 | 97 | 128 |
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +e++g k++Lvfy ++g+k++Wvmhey+ Rsa1.0_00760.1_g00008.1 79 REKIGEKRVLVFY----KSGSKSNWVMHEYHH 106 6789*********....7899*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.927 | 3 | 170 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.59E-32 | 4 | 126 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-16 | 5 | 105 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MENMVGLRFL PTDEEIVDHY LRLKNNGGPN TSHVDQVIST LNICNFDPWD LPQKSKIESS 60 NQVWYFFGRK ESKYKKGNRE KIGEKRVLVF YKSGSKSNWV MHEYHHTSCF SPNESGTYTI 120 CKVQFKGEES EISSSSVVDN VEHSHSLATP MNNPGGSESG TYTICKVQFK GEASEISSSS 180 GVDHVVHSPS LPTPMNYPGG LRWVLQNSSQ FSGVLDNQQA MQFEAQTQMA FDILPSCDWK 240 SLLDDGHADE KKFWDRLQRI DCNDQGTSCL AKFCYGIGED RDIAHMLPGF QDFLSSKSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-14 | 6 | 123 | 20 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-14 | 6 | 123 | 20 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-14 | 6 | 123 | 20 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-14 | 6 | 123 | 20 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-14 | 6 | 123 | 23 | 165 | NAC domain-containing protein 19 |
3swm_B | 1e-14 | 6 | 123 | 23 | 165 | NAC domain-containing protein 19 |
3swm_C | 1e-14 | 6 | 123 | 23 | 165 | NAC domain-containing protein 19 |
3swm_D | 1e-14 | 6 | 123 | 23 | 165 | NAC domain-containing protein 19 |
3swp_A | 1e-14 | 6 | 123 | 23 | 165 | NAC domain-containing protein 19 |
3swp_B | 1e-14 | 6 | 123 | 23 | 165 | NAC domain-containing protein 19 |
3swp_C | 1e-14 | 6 | 123 | 23 | 165 | NAC domain-containing protein 19 |
3swp_D | 1e-14 | 6 | 123 | 23 | 165 | NAC domain-containing protein 19 |
4dul_A | 1e-14 | 6 | 123 | 20 | 162 | NAC domain-containing protein 19 |
4dul_B | 1e-14 | 6 | 123 | 20 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00760.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490136.1 | 1e-111 | PREDICTED: NAC domain-containing protein 5-like | ||||
Swissprot | O81913 | 2e-55 | NAC4_ARATH; NAC domain-containing protein 4 | ||||
TrEMBL | A0A3N6R5J4 | 1e-93 | A0A3N6R5J4_BRACR; Uncharacterized protein | ||||
STRING | Bo8g117560.1 | 3e-84 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 7e-52 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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