PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00756.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 62aa MW: 7532.55 Da PI: 7.3527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.3 | 2.1e-08 | 7 | 60 | 35 | 77 |
NAM 35 kevdiykvePwdLp.k..........kvkaeekewyfFskrdkkyatgkrknra 77 +e++i++++Pwd+p k+++++ wyf s+r+ ky +g+++nr+ Rsa1.0_00756.1_g00011.1 7 REINICSLDPWDFPwFmflvyvsvqsKIESKDIVWYFLSRREIKYGNGNHQNRS 60 689***********64799999887766667779******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.368 | 1 | 62 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-7 | 7 | 60 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MESTLNREIN ICSLDPWDFP WFMFLVYVSV QSKIESKDIV WYFLSRREIK YGNGNHQNRS 60 KD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00756.1_g00011.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 9e-11 | NAC domain containing protein 5 |