PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00730.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 274aa MW: 30426.5 Da PI: 4.3326 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28 | 2.9e-09 | 16 | 55 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 e k +r+vt skRr++++ K EL+ L + ++av s+ Rsa1.0_00730.1_g00002.1 16 ETKEQRSVTCSKRRKTLFSKSAELCRLFGSNIAVFATSPG 55 77899*****************************988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.685 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-11 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.90E-18 | 6 | 73 | No hit | No description |
SuperFamily | SSF55455 | 9.55E-14 | 7 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-10 | 16 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MARGGTKRKI EIKKRETKEQ RSVTCSKRRK TLFSKSAELC RLFGSNIAVF ATSPGDKTSL 60 ASSFSGHASA SEIVDCYLSG TLPPKISVPN ESELGFWWTD PDLYSSCDDL SQLDVIEDLI 120 KRTKKDLMDC LGKQEDSRVS CFDRGESLTQ HASDSHRNPS SSSQAVTMYQ NISDPLDGSS 180 QVIYGGELSS GQSRYLVNKD SGSFICETEK ENNLIRSVPQ ETEQTQSIVN VDGVDEDQSF 240 WDELLYYEDV FGLNNGEDDV MIDIGEFLND IESG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 29 | KKRETKEQRSVTCSKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00730.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438220.1 | 0.0 | PREDICTED: uncharacterized protein LOC108810612 | ||||
TrEMBL | A0A398AGB1 | 1e-155 | A0A398AGB1_BRACM; Uncharacterized protein | ||||
STRING | Bra020600.1-P | 1e-153 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48150.1 | 6e-69 | M-type_MADS family protein |