PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G48150.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 323aa MW: 36477 Da PI: 4.1905

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G48150.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.4	2.5e-10	28	66	6	44
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k +r+v skRr +++ KA L+ L +a++av + s++ AT1G48150.1 28 KQQRSVACSKRRPTLFSKAADLCLLSGANIAVFVTSPDE 66 679*********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-15	15	74	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.732	15	63	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.69E-23	16	95	No hit	No description
SuperFamily	SSF55455	1.15E-16	17	108	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.7E-10	28	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MQSSNVTDCT MRKRGTKRKI EIEKRMTKQQ RSVACSKRRP TLFSKAADLC LLSGANIAVF 60 VTSPDENSDV VYSFSGYSHA SEIVDCYLNN KSPPKTTINP ESAKFWWEEP DLYRDCDDLS 120 ELRIIEDRLM RTKKHLMDYL EKKEKSHSVS KSDQNPNNDS GSSSSSSQIA SDFGQNPSTL 180 SPSSLKIVSF DQNSYSSLEP SSQVTTCFDQ NPVFSVGSES SSDQSRYLVN EDSGFVDGLL 240 CETEEENNGM RLPQETQTQP MFTEEDQSFW ENLDVDDVFG LFKDDNNLEV PLQDHSSTNE 300 DDELLIDISE YLSEEAMECP CFS

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18402061	0.0
Genevisible	256202_s_at	1e-130
Expression Atlas	AT1G48150	-
AtGenExpress	AT1G48150	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G48150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT1G60040, AT1G60880, AT1G60920, AT1G69120, AT1G71692, AT1G77080

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G48150

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC023673	0.0	AC023673.3 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_175249.1	0.0	MADS-box transcription factor family protein
TrEMBL	A0A178W5Y4	0.0	A0A178W5Y4_ARATH; Uncharacterized protein
TrEMBL	Q9LNG8	0.0	Q9LNG8_ARATH; F21D18.12
STRING	AT1G48150.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6395	14	42

Link Out ? help Back to Top
Phytozome	AT1G48150.1
Entrez Gene	841234
iHOP	AT1G48150
wikigenes	AT1G48150

Publications ? help Back to Top
De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Popescu SC, et al. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5 [PMID:17360592] Broekgaarden C, et al. Genotypic variation in genome-wide transcription profiles induced by insect feeding: Brassica oleracea--Pieris rapae interactions. BMC Genomics, 2007. 8: p. 239 [PMID:17640338] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474]