PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00705.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 317aa    MW: 36764.9 Da    PI: 7.0432
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00705.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.11.3e-28412112102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTT............ CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekksks............ 74 
                              Fl k+y+++ed++++e+isw+e+g+ f+v+++ efa+++Lp+ Fkh nf+SFvRQLn+Y  +k++ + ++                
  Rsa1.0_00705.1_g00010.1  41 FLVKTYKVVEDPTTNEVISWNEDGTGFIVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYiKYKNLPKGKA---Pprpggeskrtst 123
                              9**********************************************************33444433333...245799999**** PP

                              ............................................................XTTSEEEEESXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  75 ............................................................kekiweFkhksFkkgkkellekikrk 100
                                                                                          +++ weF+++ F+kg++el+++i+r+
  Rsa1.0_00705.1_g00010.1 124 aelywkaftpqyfaqgntpssheennrprtqgeeghnfnlttptarckrpkpmflgfrkvSTTRWEFSNEMFRKGQRELMCNIRRR 209
                              ******************************************99999999888877765549************************ PP

                              XX CS
             HSF_DNA-bind 101 ks 102
                              ks
  Rsa1.0_00705.1_g00010.1 210 KS 211
                              97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3236148IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.01E-2136107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-4837209IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-2141140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-134164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-137991IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-1392104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-32187209IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEDDHLRCND NTNEEERLPL EFMSGKQTYT AELQPQQPPP FLVKTYKVVE DPTTNEVISW  60
NEDGTGFIVW QPAEFARDLL PTLFKHCNFS SFVRQLNTYI KYKNLPKGKA PPRPGGESKR  120
TSTAELYWKA FTPQYFAQGN TPSSHEENNR PRTQGEEGHN FNLTTPTARC KRPKPMFLGF  180
RKVSTTRWEF SNEMFRKGQR ELMCNIRRRK SCPHSHSHNK SHQVVPTTTR EKQEDHHLED  240
QRSSSSSSSS VYSALLDENK CLKNENEFLS SELGKTKKKC KQLMELVERY RGEDEEGETD  300
DDDSDDQGLK LFGVKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A8e-153999565HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A8e-153999565HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00705.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476058.11e-72PREDICTED: heat stress transcription factor B-3
SwissprotO222303e-58HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A078HD898e-70A0A078HD89_BRANA; BnaA03g19560D protein
TrEMBLA0A397ZWW88e-70A0A397ZWW8_BRACM; Uncharacterized protein
TrEMBLM4C7Q78e-70M4C7Q7_BRARP; Uncharacterized protein
STRINGBra000235.1-P1e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-56heat shock transcription factor B3