PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00655.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 598aa    MW: 65688 Da    PI: 8.3296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00655.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18399449155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++y+GVr ++ +gr++AeIrdp +   + r++lg+f++a eAa+a++aa+++l+g
  Rsa1.0_00655.1_g00014.1 399 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAVEAARAYDAAARNLRG 449
                              68********.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF024706.3E-7111181IPR003399Mce/MlaD
PfamPF008472.3E-12399449IPR001471AP2/ERF domain
CDDcd000182.69E-20399457No hitNo description
Gene3DG3DSA:3.30.730.104.1E-31400457IPR001471AP2/ERF domain
PROSITE profilePS5103223.13400457IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21400458IPR016177DNA-binding domain
SMARTSM003809.3E-38400463IPR001471AP2/ERF domain
PRINTSPR003672.7E-9401412IPR001471AP2/ERF domain
PRINTSPR003672.7E-9423439IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032365Biological Processintracellular lipid transport
GO:0009706Cellular Componentchloroplast inner membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005319Molecular Functionlipid transporter activity
GO:0005543Molecular Functionphospholipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSSSSMIISP RVYYPNGLPH LPPKPRTRQH LVARAASPSS QPEGKKSPLT VVLDVSRNIW  60
RQTLKPLSDF GFGKRSVWEG GVGLFLVSGA ALLALSWAWL RGFQMRAKFR KYQTVFDLSQ  120
ASGICTGTPV RICGVTVGTV IRVNPSLKNI EDVAEIIIPM NALVEVNQSG LLMETMINIT  180
PKDPIPEPSV GPLHQECGKE GLIVCDKEKI KGEQGVSLDE LVGIFTRMGC DVEEIGVANA  240
FSLAERAVPV IEDAKPLLKK IQAMAEDAQL LLSEFRDSGL LKEVECLTRS LTQASDDMRK  300
VNSTIMTLEN TELIQKSIYT LVYTLKNVEI FWDSHAMKPQ EKTLNYSSNL SVDYYDQQDT  360
DLSSFKSHYF WFPSLTMRKG RGSSVVPPAL HGGSAVKEPR YRGVRKRPWG RFAAEIRDPL  420
KKSRVWLGTF DSAVEAARAY DAAARNLRGS KAKTNFPLDC SPSSPLRPLN YQNQMDPFMD  480
HRLYGGGGGG GGGGSFQEQQ VISRPASSSL SSTVKSCSGP RPAAKTTKRY PRTPPVAPED  540
CHSDCDSSSS VIDDGDDIAS SSSRLRKAPF LFDLNLPPLD GVVDLFADDD LHCTDLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20401458361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20397458264ATERF1
3gcc_A1e-20397458264ATERF1
5wx9_A6e-20393457772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of a phosphatidic acid/lipid transport complex in the chloroplast envelope. Specifically binds phosphatidic acid (PA). Involved in lipid transfer from the endoplasmic reticulum (ER) to plastids, and necessary for thylakoids formation. {ECO:0000269|PubMed:16818883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00655.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439953.10.0PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like
SwissprotQ9LTR20.0TGD2_ARATH; Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic
TrEMBLA0A0D3CI280.0A0A0D3CI28_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELT90.0A0A3P6ELT9_BRAOL; Uncharacterized protein
STRINGBo5g109800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1006723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.12e-60ethylene response factor 7
Publications ? help Back to Top
  1. Krogh A,Larsson B,von Heijne G,Sonnhammer EL
    Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
    J. Mol. Biol., 2001. 305(3): p. 567-80
    [PMID:11152613]
  2. Xu C,Fan J,Riekhof W,Froehlich JE,Benning C
    A permease-like protein involved in ER to thylakoid lipid transfer in Arabidopsis.
    EMBO J., 2003. 22(10): p. 2370-9
    [PMID:12743031]
  3. Ferro M, et al.
    Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana.
    Mol. Cell Proteomics, 2003. 2(5): p. 325-45
    [PMID:12766230]
  4. Garcia O,Bouige P,Forestier C,Dassa E
    Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems.
    J. Mol. Biol., 2004. 343(1): p. 249-65
    [PMID:15381434]
  5. Awai K,Xu C,Tamot B,Benning C
    A phosphatidic acid-binding protein of the chloroplast inner envelope membrane involved in lipid trafficking.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(28): p. 10817-22
    [PMID:16818883]
  6. Lu B,Xu C,Awai K,Jones AD,Benning C
    A small ATPase protein of Arabidopsis, TGD3, involved in chloroplast lipid import.
    J. Biol. Chem., 2007. 282(49): p. 35945-53
    [PMID:17938172]
  7. Verrier PJ, et al.
    Plant ABC proteins--a unified nomenclature and updated inventory.
    Trends Plant Sci., 2008. 13(4): p. 151-9
    [PMID:18299247]
  8. Lu B,Benning C
    A 25-amino acid sequence of the Arabidopsis TGD2 protein is sufficient for specific binding of phosphatidic acid.
    J. Biol. Chem., 2009. 284(26): p. 17420-7
    [PMID:19416982]
  9. Song W,Maeda H,DellaPenna D
    Mutations of the ER to plastid lipid transporters TGD1, 2, 3 and 4 and the ER oleate desaturase FAD2 suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
    Plant J., 2010. 62(6): p. 1004-18
    [PMID:20345604]
  10. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  11. Roston R,Gao J,Xu C,Benning C
    Arabidopsis chloroplast lipid transport protein TGD2 disrupts membranes and is part of a large complex.
    Plant J., 2011. 66(5): p. 759-69
    [PMID:21309871]
  12. Roston RL,Gao J,Murcha MW,Whelan J,Benning C
    TGD1, -2, and -3 proteins involved in lipid trafficking form ATP-binding cassette (ABC) transporter with multiple substrate-binding proteins.
    J. Biol. Chem., 2012. 287(25): p. 21406-15
    [PMID:22544736]
  13. Fan J,Zhai Z,Yan C,Xu C
    Arabidopsis TRIGALACTOSYLDIACYLGLYCEROL5 Interacts with TGD1, TGD2, and TGD4 to Facilitate Lipid Transfer from the Endoplasmic Reticulum to Plastids.
    Plant Cell, 2015. 27(10): p. 2941-55
    [PMID:26410300]
  14. Putta P, et al.
    Phosphatidic acid binding proteins display differential binding as a function of membrane curvature stress and chemical properties.
    Biochim. Biophys. Acta, 2016. 1858(11): p. 2709-2716
    [PMID:27480805]