PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00650.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 377aa MW: 41415.5 Da PI: 6.603 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.8 | 2.1e-27 | 139 | 193 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kp+++WtpeLH++Fv+ave+L G +kA+P++ile+m+vk+L +++v+SHLQkYR++ Rsa1.0_00650.1_g00009.1 139 KPKVDWTPELHRNFVQAVEKL-GVDKAVPSRILEIMNVKSLNRHNVASHLQKYRSH 193 79*******************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.682 | 136 | 195 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-18 | 137 | 196 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-27 | 137 | 196 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-25 | 139 | 193 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-7 | 142 | 191 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MLTVSPLVVN TTSRDHYMAA DFADFTTDDL PDFTAAEGSL DVLDGIDFYD DLFIEFNGDD 60 VLPDLEIDSD VLGEYSGSGR DEDQEMEGNT SAASETSERD GGRCNPEGGA STDKTVRQGK 120 RKGKKIKGCF SNDTGIKKKP KVDWTPELHR NFVQAVEKLG VDKAVPSRIL EIMNVKSLNR 180 HNVASHLQKY RSHRKHLLAR EAEAASWNLR RHATVAVPEG EKLSMAHPAL GYPPHVTPLH 240 QGHFRPLHVW GHPTWPKHKP NNPSSSLHRT FPIPPAVAVA PSCWPGQPPY WHLRPLYPQG 300 YGMASSNHSS IGVPTRQLGP TNPPIDIHPS NESIDAAIGD VITKPWLPLP LGLNPPSVDG 360 VMTELQRQGV SNVPPLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-17 | 137 | 191 | 3 | 57 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00650.1_g00009.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478265.1 | 0.0 | PREDICTED: transcription activator GLK2-like | ||||
Swissprot | Q9FFH0 | 0.0 | GLK2_ARATH; Transcription activator GLK2 | ||||
TrEMBL | A0A078GC87 | 0.0 | A0A078GC87_BRANA; BnaA06g36250D protein | ||||
STRING | Bra033726.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 1e-180 | GOLDEN2-like 2 |