PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00642.1_g00018.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 449aa    MW: 48858.7 Da    PI: 9.9069
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00642.1_g00018.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.62.1e-1592179186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk++k +  ++  + +s++++f
  Rsa1.0_00642.1_g00018.1  92 CWSEKATAVLIDAWGERYMELSRGNLKQKHWKEVADIVsgmeDYGKTAKTDIQCKNRIDTVKKKYKQEKVRIASG--GGRSRWVFF 175
                              7*************************************99877788899************************97..56668**** PP

                 trihelix  83 dqle 86 
                              d+l+
  Rsa1.0_00642.1_g00018.1 176 DKLD 179
                              **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2490181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEDEEEIRSH ASSSPDTDPS PSPPPGGGGG VTVTVASTGP PSYSLTPPSS SSQQQRDPNA  60
LALALLPTSG GGGGGSGSSN GRASGGGGRE DCWSEKATAV LIDAWGERYM ELSRGNLKQK  120
HWKEVADIVS GMEDYGKTAK TDIQCKNRID TVKKKYKQEK VRIASGGGRS RWVFFDKLDR  180
LIGSTAKIPA IGSPGGGLSK IPMGIPMDSR SNVYHQQAKA PPFNNLDRLI GATARVTAAS  240
FGGGGGGNVP MGIPMSSRSS PFGQQVRTLP QQQQVRTLSQ HQQGRTLPQQ QQQGMMVKRC  300
SESKRWRFSK RNATDSDSES DAPMSDDDDS GDSLPPPPLS KRLKTEEKKM IKQEGGSKWR  360
ELSRAIMRFG EAYEQTENAK LQQVVEMEKE RMKFLKELEL QRMQFFVKTQ LEISEIKQAG  420
RRMGNTSSDD HHKSKNNMNA IVSNDDVGN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00642.1_g00018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490355.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A3N6Q5U20.0A0A3N6Q5U2_BRACR; Uncharacterized protein
STRINGBo3g065930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-171sequence-specific DNA binding transcription factors