PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00640.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 464aa    MW: 51212.9 Da    PI: 6.8977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00640.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091311333123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C  C+ksF++   L  H  +H
  Rsa1.0_00640.1_g00012.1 311 HVCATCNKSFTSYQALGGHRASH 333
                              79**********99999998887 PP
2zf-C2H212.60.00041378400123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C ksF++   L  H r+H
  Rsa1.0_00640.1_g00012.1 378 HVCNKCLKSFPTGQALGGHKRRH 400
                              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.954119141IPR007087Zinc finger, C2H2
SMARTSM003552.9119141IPR015880Zinc finger, C2H2-like
PfamPF139120.0055121142IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-6310333No hitNo description
PfamPF139129.6E-11311335IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827311338IPR007087Zinc finger, C2H2
SMARTSM003550.29311333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-6373400No hitNo description
PfamPF139122.1E-11378401IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058378400IPR007087Zinc finger, C2H2
SMARTSM003550.41378400IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280380400IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDQLHGNKSN CGFSLGRPRF GSTQEDQAEN VEKEAKSIGL REEEKDDDGA KSVDLEEKEV  60
EEEEEKKHIY CARGKKRFRS SKPLGDHKRL HTRKFSMARP KMVSAGMVGR YDERGEFEVD  120
CCVCHKKFTS MKALYGHMRF HPDRGWKGVL PPHHPLGNLS STDYYYYDDD DDDDDDGDDD  180
GEDDGDYDNH WGMGNVVDLK ESVKGSWTTR KRGRRPSLKV DESDLKDDID AKNLLFLATT  240
AEAVDLDVAE NSDSHSGEEM TKTTKNKKKK KKKKKKKKKK KRLSEMEKES SQLEAVVGGA  300
DEEGGGAREK HVCATCNKSF TSYQALGGHR ASHNKVKILD NHQARSNGEA LLLGTEAMIN  360
GLASAQGPNT SLSSGGGHVC NKCLKSFPTG QALGGHKRRH WTGPVSSEAA TTVPTAVTAV  420
PTAAASPSDS PAAASSSQVT ETLQEVKKRK LLEFDLNELP PNEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267281KKKKKKKKKKKKKKR
2268281KKKKKKKKKKKKKR
3270282KKKKKKKKKKKRL
4271280KKKKKKKKKK
5273281KKKKKKKKR
6275281KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00640.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893781e-138AC189378.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468991.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A3P6D0Q20.0A0A3P6D0Q2_BRAOL; Uncharacterized protein
STRINGBra035609.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-123C2H2 family protein