PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00616.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 418aa MW: 45727.8 Da PI: 6.6611 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.2 | 8.7e-11 | 44 | 69 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f+rtG C yG++C+++H+ Rsa1.0_00616.1_g00003.1 44 PGERDCHYFLRTGKCGYGSSCRYNHP 69 5789*********************9 PP | |||||||
2 | zf-CCCH | 36.4 | 8.5e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tG CkyG+ Ck++H++ Rsa1.0_00616.1_g00003.1 90 QPDCEYFLKTGACKYGSACKYHHPK 114 789********************96 PP | |||||||
3 | zf-CCCH | 30.7 | 5.5e-10 | 135 | 159 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++ G C++G CkF+H++ Rsa1.0_00616.1_g00003.1 135 EKSCPYYMQKGMCRFGVACKFHHPQ 159 567********************97 PP | |||||||
4 | zf-CCCH | 40.5 | 4.5e-13 | 239 | 263 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+ff+++GtCkyGd+Ck++H++ Rsa1.0_00616.1_g00003.1 239 RAECSFFMKNGTCKYGDNCKYSHPK 263 799********************96 PP | |||||||
5 | zf-CCCH | 35.1 | 2.3e-11 | 280 | 305 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f ++G+CkyG++CkF H+ Rsa1.0_00616.1_g00003.1 280 PGQPACGNFKAYGFCKYGASCKFDHP 305 57899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.5E-5 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 49 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 92 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 93 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.835 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-7 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 137 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.408 | 236 | 264 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-8 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 239 | 263 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-7 | 239 | 265 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-6 | 242 | 264 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 277 | 305 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-6 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.145 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 281 | 305 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 285 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MSETQQVQNS TESIPSSDKT EDTLTKVKVN EENKDEPSLY PDRPGERDCH YFLRTGKCGY 60 GSSCRYNHPV SHVPEAVFYH REDLPERIGQ PDCEYFLKTG ACKYGSACKY HHPKDRNGAG 120 PVLFNALGYP IRKGEKSCPY YMQKGMCRFG VACKFHHPQT QTHNVQPTSF PSVGIPYAGG 180 LPLISLPPAT YEAMARPHAP HPQAYLSLMV APPQGWSTYM GGSNSIYDVK IKIDSSSERA 240 ECSFFMKNGT CKYGDNCKYS HPKERMLPNL FNPLVLPARP GQPACGNFKA YGFCKYGASC 300 KFDHPVPVNP GLTMPSLPTA YAPPVSTQVR ITPPPGRSDS TTVSNGDEPA AENKSSETEK 360 QDHGPDKSEV QDSSQLSHSD SAALSNEAEN PSPEAKKEDD DPSPADTSGK QGSSDNDA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00616.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478283.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 26-like | ||||
Swissprot | O48772 | 0.0 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | A0A397ZR98 | 0.0 | A0A397ZR98_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DZ70 | 0.0 | M4DZ70_BRARP; Uncharacterized protein | ||||
STRING | Bra021817.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 0.0 | zinc finger nuclease 2 |