PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00612.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 24240.6 Da PI: 5.6395 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00057 | 183 | 199 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 + C++C+k+F+r n++ Rsa1.0_00612.1_g00012.1 183 FACTICSKTFNRYNNMQ 199 78*********988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.3E-6 | 162 | 200 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSLRNLHEMG LSFESPSFIE WLKAPSSSSS SLLFRIKTKD VVISGSNHQS MLERTMFLYQ 60 PQEPLNTSIR CLPLLNKLME NESQASDDIK EEKDDDDDVV TLQIGLPNYR RGSSVEDDSD 120 TTSDHHQKKP IKREIIDDGV VMMKKRRKTM EFDEEMNDLD MEVCGKRFWI PSPAQIHVGP 180 MQFACTICSK TFNRYNNMQV RLSLSYHLLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 147 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00612.1_g00012.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438239.1 | 1e-145 | PREDICTED: zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 9e-97 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A397YV63 | 1e-123 | A0A397YV63_BRACM; Uncharacterized protein | ||||
STRING | Bo5g008880.1 | 1e-115 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 7e-86 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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