PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00610.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 241aa    MW: 26935.8 Da    PI: 9.404
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00610.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-201272257
                             T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             ++R+++tkeq++ Le+l+++  r+psa+++++++ +l    +++ ++V++WFqN++a++++
  Rsa1.0_00610.1_g00002.1 12 SPRWNPTKEQITLLENLYKQgIRTPSADQIQQITGRLrafgHIEGKNVFYWFQNHKARQRQ 72
                             58*****************99**************************************97 PP
2Wus_type_Homeobox114.55.3e-371174265
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                             +++RW+Pt+eQi++Le+lyk+G+rtP++++iq+it +L+++G+ie+kNVfyWFQN+kaR+rqkq
  Rsa1.0_00610.1_g00002.1 11 SSPRWNPTKEQITLLENLYKQGIRTPSADQIQQITGRLRAFGHIEGKNVFYWFQNHKARQRQKQ 74
                             689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.722873IPR001356Homeobox domain
SMARTSM003894.6E-51077IPR001356Homeobox domain
PfamPF000463.2E-181372IPR001356Homeobox domain
CDDcd000869.40E-71374No hitNo description
SuperFamilySSF466898.55E-121375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-81372IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MENERSAVTT SSPRWNPTKE QITLLENLYK QGIRTPSADQ IQQITGRLRA FGHIEGKNVF  60
YWFQNHKARQ RQKQKQDRIA SFSRLLHKTS LGCVSPNYLH QVSDNQHGSS HRQDLHSNKV  120
MLPSGGYEKR TITDHKKHVS DITTARISMS SSSLRFDRFS LGDHGYFGEG INVNTNGLKT  180
LPLFPLQPLD ASNDDVAGNS SFSPCHDSPV TYCGDDGGRG PSFIDFFSGG SSRFDNFGNG  240
L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00610.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716707.11e-143WUSCHEL-related homeobox 2-like
SwissprotQ6X7K11e-116WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A397XLT11e-141A0A397XLT1_BRACM; Uncharacterized protein
STRINGBo9g138280.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-101WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]