PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00607.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 145aa MW: 17091.1 Da PI: 10.0309 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.5 | 3e-07 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 e+++ fsk +ngi+ K +EL L ++ v v+i+s tgk Rsa1.0_00607.1_g00004.1 11 TESSISEDAIFSKCLNGIFEKSNELARLYNVIVVVMIVSFTGK 53 5788888889*****************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.479 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-9 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-7 | 16 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MDGKMNEKRF TESSISEDAI FSKCLNGIFE KSNELARLYN VIVVVMIVSF TGKPFLFKSP 60 SSLELVRILK LQKTLYSVMK DLVYEKERAK VLKKRHQEFL QKYEVKEIKN MKMDEAITFR 120 DNLKALQEII KRKKMDIEDL SSQKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00607.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018473767.1 | 1e-100 | PREDICTED: uncharacterized protein LOC108844990 | ||||
TrEMBL | V4KPE9 | 2e-30 | V4KPE9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398327.1 | 3e-31 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15480 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47760.1 | 9e-23 | AGAMOUS-like 102 |