PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00601.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35439.6 Da PI: 7.6022 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.5 | 7.7e-34 | 76 | 216 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 lp+G++F+P+d+e++ +L++kv+++k ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r Rsa1.0_00601.1_g00016.1 76 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRR 157 799***********9.89*****999956644322..22222333336**********.566677888****************** PP NAM 77 atk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ + +W++tgk+++vls ++ + g kk+Lv+y gr++k+ekt+Wvmh+y+l Rsa1.0_00601.1_g00016.1 158 KVStdeeghETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 216 733345444788************.8889**********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-36 | 68 | 235 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.65 | 76 | 235 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 77 | 216 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSWCDGSDEN YDLNLERASN TDHPSIQLKD QSQSCVTSRP DSKTIVESPI MTCSSCGHKM 60 HQQDDQVGSI KDLPSLPAGV KFDPSDKEIL MHLEAKVSSD KRKLHPLIDE FIPTLEGENG 120 ICYTHPEKLP GVSKDGQVRH FFHRPSKAYT TGTRKRRKVS TDEEGHETRW HKTGKTRPVL 180 SQSGEAGFKK ILVLYTNYGR QKKPEKTNWV MHQYHLGHSE DEKDGEPVLS KVFYQTQPRQ 240 CGGSTETKPK NLVNLNRFSY ENLQAGFGYE HGGKSEETAQ VIRELVVREG DGSCSFLSFT 300 CDASKGKESF MKNQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00165 | DAP | Transfer from AT1G28470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00601.1_g00016.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086476 | 0.0 | AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458762.1 | 0.0 | PREDICTED: NAC domain-containing protein 10 | ||||
Swissprot | F4HY61 | 0.0 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | M4EVS7 | 0.0 | M4EVS7_BRARP; Uncharacterized protein | ||||
STRING | Bra032910.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 0.0 | NAC domain containing protein 10 |