PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00589.1_g00032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 291aa MW: 32912.8 Da PI: 8.1557 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Rsa1.0_00589.1_g00032.1 39 YSCNFCRREFRSAQALGGHMNVH 61 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.13E-6 | 36 | 65 | No hit | No description |
PROSITE profile | PS50157 | 11.198 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MEKPGGLWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYS CNFCRREFRS AQALGGHMNV 60 HRRDRARLKQ SEDQYLFSKS SSPPEYPSHN CSDDIRETSS YTLVFKSNPN RFESQHSCVI 120 DLSSSPSPLP FLTPRVSSSS PSFVVEPSND SKKIISSSPW SCPGKKGCDL YEVPFMEGSR 180 KRKIDRDEPK NGDKVNVNLE NTNDLSVRMN LVIHKDCPNT AQWGDEEIGK GDMIHKRRRM 240 RESSSQPSIF ISSLSCKCAI ITRNEELKHK GGHFEDLDLE LRLGGDPRKA N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 34 | 61 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 34 | 61 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00589.1_g00032.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437707.1 | 0.0 | PREDICTED: uncharacterized protein LOC108810073 | ||||
Swissprot | O80942 | 1e-131 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | A0A397Z7H4 | 0.0 | A0A397Z7H4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CLS8 | 0.0 | M4CLS8_BRARP; Uncharacterized protein | ||||
STRING | Bra005165.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11047 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-103 | zinc-finger protein 10 |