PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00556.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 546aa    MW: 63008.3 Da    PI: 4.4703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00556.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.43.2e-2461372128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra.......t 78 
                              p G rF+Pt+  lv++yLk+kve+++ +    ik++++y   Pw L++ ++    ++ewy+F++r  +  +    +r+        
  Rsa1.0_00556.1_g00006.1   6 PGGSRFEPTELGLVKRYLKNKVEKNDSDS---IKTLNVYGDAPWLLHHDTNPlyARNEWYYFVPRTVRGVK--TVSRMvpgngesF 86 
                              779**********************9665...**************85332233678*******9876543..4445423333334 PP

                      NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                g+Wk+ gk ke+++ ++el+g k++Lvf k+   + + ektdW m+ey+l
  Rsa1.0_00556.1_g00006.1  87 LGGTWKSVGKRKEIKK-NKELKGYKRVLVFNKNvaGKLEKEKTDWHMDEYSL 137
                              49*************9.999***********7532445568*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-284151IPR003441NAC domain
PROSITE profilePS5100529.6075155IPR003441NAC domain
PfamPF023653.5E-167137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MATKYPGGSR FEPTELGLVK RYLKNKVEKN DSDSIKTLNV YGDAPWLLHH DTNPLYARNE  60
WYYFVPRTVR GVKTVSRMVP GNGESFLGGT WKSVGKRKEI KKNKELKGYK RVLVFNKNVA  120
GKLEKEKTDW HMDEYSLHKN GDEFHDLVLC HYSLHKNGDE FHDLVLCHVR LLNSAERFKP  180
LVPPAHQLDD NNDNHVLPNQ EQQEAGFAMQ EYKGGDVNQH QQQQEEEQED SRMPLQSNYN  240
QGQYLLEANV CQNDMMMLEN DRGYLNQHQH QQQQQQQQEQ EGSLILSHPP LEINNNQEPC  300
PSDDLAYHGA KDDMTGYGLM PNFNDANQQH EQQQDSPTLL HPPLQINDNQ EHHPLEDYAF  360
DGADDNVTFD IDELLNSLDE WKEQEDSPPS LLFPPLQSND NHGQCPPLVP SQVENHNNTV  420
VPNQEQREAL GFANQNDMPM IKKERGDDVE QQQQQQDQEQ LQKVLMSFLL APSWDTDFIF  480
DEADAEDDFI KEILDVHCTQ EQLQELEEEQ SKALQRVPQA QDSGVRADQV MPKESSQGFL  540
FTNTQT
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00556.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470917.10.0PREDICTED: alpha-protein kinase 1-like
RefseqXP_018470954.10.0PREDICTED: alpha-protein kinase 1
TrEMBLA0A3P6D8891e-153A0A3P6D889_BRACM; Uncharacterized protein
STRINGBra033406.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1883757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.13e-26NAC domain containing protein 6