PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G03490.1
Common NameANAC006, F21B7.11, NAC006
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 281aa    MW: 32202.6 Da    PI: 4.353
Description NAC domain containing protein 6
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G03490.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.11.9e-154104197
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkd 89 
                  lp+G rF Ptd  lv  yL++kve+++ ++   i+++di++  Pw Lp+ v++   +++ewy+F++  ++  +    +r+       + g+W++   +
  AT1G03490.1   4 LPVGSRFCPTDLGLVRLYLRNKVERNQSSF---ITTMDIHQDYPWLLPH-VNNplfNNNEWYYFVPLTERGGKILSVHRKvaarggSEGGTWRSNDGK 97 
                  799***********************9666...9**************4.333355889*******999998766666643444446699****9999 PP

          NAM  90 kevlskkg 97 
                  ke+++  +
  AT1G03490.1  98 KEIKDG-H 104
                  999984.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-224128IPR003441NAC domain
PROSITE profilePS5100520.8214156IPR003441NAC domain
PfamPF023655.7E-95103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKILPVGSRF CPTDLGLVRL YLRNKVERNQ SSFITTMDIH QDYPWLLPHV NNPLFNNNEW  60
YYFVPLTERG GKILSVHRKV AARGGSEGGT WRSNDGKKEI KDGHMQKGDG LRASDDLQKV  120
VLCRIRYKKE ANVNEFGLVN HQAHQTQDAL TGFADQLEMM LEGQEDREQK EEADLTGFAD  180
SLETMLEGQE DHEQPEDADL TGFADSLETM LEGHEDREQP EEAELTVTQQ QQQQQQQQQR  240
QEDCDVTQEQ EKDDVMVLIN NPNDALALGN YEIIDLTRVD K
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453350330.0
Genevisible264829_at1e-128
Expression AtlasAT1G03490-
AtGenExpressAT1G03490-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G03490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G03490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0025600.0AC002560.2 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171848.30.0NAC domain containing protein 6
SwissprotQ9LR740.0NAC6_ARATH; NAC domain-containing protein 6
TrEMBLA0A178W8A01e-155A0A178W8A0_ARATH; NAC006
STRINGAT1G03490.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Maor R, et al.
    Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.
    Mol. Cell Proteomics, 2007. 6(4): p. 601-10
    [PMID:17272265]