PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00548.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 311aa    MW: 35456.1 Da    PI: 7.3888
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00548.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57383.53e-2696185497
                   DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                               rl+se+DeivlLqGlid + ++  +p++d   +ye +k s sf+v+  q+ +Ki +LK+K+++ + +   g    f+++h++ +f
  Rsa1.0_00548.1_g00004.1  96 TRLFSEKDEIVLLQGLIDSQGNN--NPFEDRRPLYESMKASFSFDVTWAQFKKKIWSLKRKYTRTEMR--GGVASFFRNPHEKRCF 177
                              79****************95444..7**************************************9999..99999*********** PP

                   DUF573  90 elskkiWg 97 
                              +lsk iWg
  Rsa1.0_00548.1_g00004.1 178 QLSKAIWG 185
                              *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-2396185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANNLKHPLE DPPSSSTGEK EIESEEEEET IISSEEEDEE ETPPRSGSKE DDFGSSESQL  60
TGRKRLSTNV ASSNVAKKVY TQQGGKMGTN RLPPCTRLFS EKDEIVLLQG LIDSQGNNNP  120
FEDRRPLYES MKASFSFDVT WAQFKKKIWS LKRKYTRTEM RGGVASFFRN PHEKRCFQLS  180
KAIWGAVESD ESERGLSKKQ RDLVTPLKGR NNAQLGDMKK KKKSRLVVEK ESADWDDESA  240
FFLGMDFLKA KWTKVPPTES KKETQEKMKK LYASELECQK FEEMLKAMKN KCAHAKVELL  300
NEVTSLIMAA D
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00548.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480867.10.0PREDICTED: probable transcription factor At1g66420
TrEMBLA0A3N6PQW61e-115A0A3N6PQW6_BRACR; Uncharacterized protein
STRINGBra028108.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-37DNA-binding storekeeper protein-related transcriptional regulator