PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00543.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 300aa    MW: 32940.4 Da    PI: 8.7732
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00543.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding384e-12556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             + +WT++E++ l+ +vk++G+g Wk I r          R+  ++k++w+++
  Rsa1.0_00543.1_g00013.1  5 KSKWTEDEEDALLAGVKKHGPGKWKNILRDPDfstvlSLRSNIDLKDKWRNL 56
                             679**********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.393161IPR017930Myb domain
SuperFamilySSF466894.02E-15261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-14358IPR009057Homeodomain-like
SMARTSM007173.2E-8459IPR001005SANT/Myb domain
PfamPF002492.2E-8556IPR001005SANT/Myb domain
CDDcd116604.23E-19756No hitNo description
SMARTSM005261.2E-17123189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.5E-12124201IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.96E-15124206IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.516125201IPR005818Linker histone H1/H5, domain H15
PfamPF005388.1E-12127199IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGKEKSKWTE DEEDALLAGV KKHGPGKWKN ILRDPDFSTV LSLRSNIDLK DKWRNLSVPA  60
EIQGSKDKVR TPKIKAAAFQ LAAAATTPTP SSASSPVAPP PLPRSGGSSD LSIGDSCNML  120
IDAKNAPRYD GMIFEALSAL KDSNGSDVTT IFNFIEQKMY EVPEQFKRVL GSRLRRLAAQ  180
GKLEKVSQLK SGTQNFYRMN NNSFLAMRTP VAAKPKEGNG RHRQTGNSQG GLTVSQEKID  240
LASGTAAYKL YEVDGKLEAL SGVVDERERM TELSEQAEIM LLLAEELHER CCRGEIVELN
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00543.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728591e-32AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444933.10.0PREDICTED: telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L11e-115TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A3P5YEA81e-173A0A3P5YEA8_BRACM; Uncharacterized protein
STRINGBra025967.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-102MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]