PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00515.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 397aa    MW: 44010 Da    PI: 7.3521
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00515.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.84.5e-29232319291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH
  Rsa1.0_00515.1_g00016.1 232 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPNKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNH 315
                              9******************************************999..999*********************************** PP

                     FAR1  88 elap 91 
                              +l+p
  Rsa1.0_00515.1_g00016.1 316 PLMP 319
                              *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-26232319IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MLMKGTGNND GGGARNNGID GSRNNSGGGG IGTGNGCNCV DVCKYEPIVP RLNFGVSFVS  60
CIWASGVTGF LAKVLASWLR FTLSPVIHHL LCLSPIEKPK SIAAASDLTS AAVESPGKLQ  120
KVSVTKASCK RIKTCPCSLL DICLDFRIDN GDTDAAGMMM GIHNEMGESS GQAMIEQDDE  180
NHNEIGEHSG QAMPLEQDEK VDLDSIPLEV ADMADEPFVG QEFESESAAH GFYNAYATKV  240
GFVIRVSKLS RSRHDGSPIG RQLVCNKEGY RLPNKRDKVI RQRAETRVGC RAMILIRKEN  300
SGKWVITKFA KEHNHPLMPG RVRRGCIYDQ YPNEHDKIQE LMQQLAAEKK RAATYKRHLE  360
MLFEHIEQHN EGLTKRIQHI VDNVRDLEQR DHQQNQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00515.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442925.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A397YX061e-175A0A397YX06_BRACM; Uncharacterized protein
STRINGBo6g076470.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-159FAR1 family protein