PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00509.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 256aa MW: 28131.9 Da PI: 6.909 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 91.5 | 1e-28 | 171 | 226 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RR++Rak+e e+k ++ kpylheSRh+hA+rR+R+sgGrF Rsa1.0_00509.1_g00014.1 171 QEPVYVNAKQYQGILRRRKARAKAELERKA--TNGKPYLHESRHNHAVRRARASGGRF 226 69**************************99..899**********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.4E-28 | 169 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.774 | 170 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.8E-25 | 172 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.9E-21 | 173 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 175 | 195 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.9E-21 | 203 | 226 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MESNSGRGNE AEVNHNDAGQ QHQPMMYAEP WWKSNSFGVD RPSLVPSKSS SLEECPDGSE 60 SNDVHSAASE DDGACKDSQA PTSSPSVDNH GTEGNDPAQL AAPVGNMHCQ GQQLVQPPEL 120 VGHYIACVPN PYQDPYYGGM VGSYGHQQLQ GFHPYPGMPG ERTALPLDVT QEPVYVNAKQ 180 YQGILRRRKA RAKAELERKA TNGKPYLHES RHNHAVRRAR ASGGRFAKKT EAEVAAEREK 240 EKGFVQQPTR QALNRF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 2e-14 | 170 | 231 | 1 | 64 | HAPB protein |
4g92_A | 2e-14 | 170 | 231 | 1 | 64 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00509.1_g00014.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018476840.1 | 1e-164 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
Swissprot | Q9LXV5 | 1e-114 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A3P6APJ7 | 1e-118 | A0A3P6APJ7_BRAOL; Uncharacterized protein | ||||
TrEMBL | V4LN10 | 1e-118 | V4LN10_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399770.1 | 1e-119 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5946 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12840.3 | 2e-98 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
---|---|---|---|
|