PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00496.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 254aa    MW: 28501.2 Da    PI: 4.8372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00496.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1796145254
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                               y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Rsa1.0_00496.1_g00003.1  96 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 145
                              69*******.**********44465..*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-2895155No hitNo description
PfamPF008471.9E-1196143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-2996155IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2196156IPR016177DNA-binding domain
SMARTSM003802.7E-3596160IPR001471AP2/ERF domain
PROSITE profilePS5103221.87896154IPR001471AP2/ERF domain
PRINTSPR003674.4E-1097108IPR001471AP2/ERF domain
PRINTSPR003674.4E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MYSSPSSWSS SQESFLWDES SFLDQSSNHQ SFFSVDYIYS DDSNHQSFLC PSYNYSNDFF  60
SFESPEMMIK EESQNADVSN SEEEEKIGSV IDEEKSYRGV RKRPWGKFAA EIRDSTRNGI  120
RVWLGTFDKA EEAALAYDQA AFATKGSLAI LNFPVEVVRE SLKKMENVNL EDGGSPIMAL  180
KRKHSLRNRP RGKKRSNSLS CSSNSSSSTS SSSSSSTSRS RNDKQSVVKQ ESGTLVVFED  240
LGAEYLEQLL MSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2895157163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00496.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894330.0AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481294.10.0PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-124ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078FRC81e-143A0A078FRC8_BRANA; BnaC04g42060D protein
TrEMBLA0A0D3C3D61e-143A0A0D3C3D6_BRAOL; Uncharacterized protein
STRINGBo4g176080.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-109ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]