PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00479.1_g00013.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TALE

Protein Properties

Length: 661aa MW: 73000 Da PI: 7.1702

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00479.1_g00013.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	388	425	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe+ ++yp+ +++ LAk++gLt +qV++WF N R + Rsa1.0_00479.1_g00013.1 388 FENflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 425 776669******************************88 PP
2	BELL	115.1	3.7e-37	251	322	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+eV++rY+qy++q+q+vi sFe +ag+gsak+YtslAlk+iSr+Fr+Lk+aia+qi Rsa1.0_00479.1_g00013.1 251 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVILSFEHAAGIGSAKSYTSLALKTISRQFRSLKEAIAGQI 322 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-71	171	320	IPR006563	POX domain
Pfam	PF07526	3.5E-44	177	319	IPR006563	POX domain
PROSITE profile	PS50071	12.26	366	429	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-28	368	442	IPR009057	Homeodomain-like
CDD	cd00086	7.44E-12	369	429	No hit	No description
SMART	SM00389	1.0E-9	369	433	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-16	370	436	IPR009057	Homeodomain-like
Pfam	PF05920	8.9E-18	386	425	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDDD SNNNTNNNNS SFVFLDPHAP 60 PQNTSQQFVG VPLSGHKAAS ITSADNISVL QGYPQRVQYS HYSSHQVDPS HHQAACETPR 120 AQQGLFLTLS SQQQQHQQRQ NQHQTLHHVG FGSGPGEDIR VGSGSVGSGV TNGIVNLVSS 180 KYLKAAQELL DEVVKADSND INTKSQLFSS KKGTSGTDDR VVRESSTGAG EGSGGGGEAS 240 EKLTVEIGTA ERQEIQMKKA KLSSMLHEVE QRYRQYHQQM QMVILSFEHA AGIGSAKSYT 300 SLALKTISRQ FRSLKEAIAG QIKTANKSLG EEDSVSGVGR LKFVDHHLRQ QRAIQQHGMI 360 QHHPSNNAWR PQRGLPERAV SVLRAWLFEN FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI 420 NARVRLWKPM VEEMYMEEMK EQGKNIGSME KEPNFDKNNE DSASKSTSNQ EKSPMRGGGA 480 DSYHLKPNHS GDLEGVSGMQ GSPKRLRTNE ETMMQPSNVD FTSNEKLTMK ILEERQGIRS 540 DGGYPFMGSF GQYQMDEMSR FDVAVSDQEL LAQRYSGNNN GVSLTLGLPH CDSLSSTHHQ 600 GFMQTHHGIP MERRVKIGET EEYGAATISA ATVHSSAAAY SGMNMQNQKR YVAQLLPDFV 660 A

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDDD SNNNTNNNNS SFVFLDPHAP  60
PQNTSQQFVG VPLSGHKAAS ITSADNISVL QGYPQRVQYS HYSSHQVDPS HHQAACETPR  120
AQQGLFLTLS SQQQQHQQRQ NQHQTLHHVG FGSGPGEDIR VGSGSVGSGV TNGIVNLVSS  180
KYLKAAQELL DEVVKADSND INTKSQLFSS KKGTSGTDDR VVRESSTGAG EGSGGGGEAS  240
EKLTVEIGTA ERQEIQMKKA KLSSMLHEVE QRYRQYHQQM QMVILSFEHA AGIGSAKSYT  300
SLALKTISRQ FRSLKEAIAG QIKTANKSLG EEDSVSGVGR LKFVDHHLRQ QRAIQQHGMI  360
QHHPSNNAWR PQRGLPERAV SVLRAWLFEN FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI  420
NARVRLWKPM VEEMYMEEMK EQGKNIGSME KEPNFDKNNE DSASKSTSNQ EKSPMRGGGA  480
DSYHLKPNHS GDLEGVSGMQ GSPKRLRTNE ETMMQPSNVD FTSNEKLTMK ILEERQGIRS  540
DGGYPFMGSF GQYQMDEMSR FDVAVSDQEL LAQRYSGNNN GVSLTLGLPH CDSLSSTHHQ  600
GFMQTHHGIP MERRVKIGET EEYGAATISA ATVHSSAAAY SGMNMQNQKR YVAQLLPDFV  660
A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	375	433	5	63	Homeobox protein Meis2
3k2a_B	2e-15	375	433	5	63	Homeobox protein Meis2
4xrs_A	2e-15	375	432	1	58	Homeobox protein Meis1
4xrs_B	2e-15	375	432	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00479.1_g00013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018440077.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018440078.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A397Z7X4	0.0	A0A397Z7X4_BRACM; Uncharacterized protein
STRING	Bo4g036190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	0.0	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]