PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00458.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 360aa MW: 39587.4 Da PI: 6.011 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.9 | 9.5e-28 | 117 | 168 | 4 | 56 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++WtpeLH++Fv+aveqL G++kA+P++ile+m+vk+Lt+++v+SHLQkYR++ Rsa1.0_00458.1_g00002.1 117 VDWTPELHRSFVQAVEQL-GIDKAVPSRILEIMNVKSLTRHNVASHLQKYRSH 168 79****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.481 | 111 | 170 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-27 | 113 | 171 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.43E-18 | 114 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-25 | 115 | 168 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-7 | 118 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MLTVSPLIVN TTSRDNYMAA NFSDFTTEGL PDFTMVGEGS LDLLEGIDYY DDFFIGFDGD 60 DALPELEIDC DIIGEYSGSG RDDEQEMEGD ISTASETSER DGGVVKPDGG ASTHKTVDWT 120 PELHRSFVQA VEQLGIDKAV PSRILEIMNV KSLTRHNVAS HLQKYRSHRK HLLAREAEAA 180 SWNLRRHATV TVAGGGKKPW KAPALGYPPH VTPLYHGHFR PLHVWGHPTC PKHKPNIPSF 240 STHRTYPIPA VAAAPSSWPD HPPYWHQQPL YPQGYGIATP NHSMYNNKSE TSIGVPTSQL 300 SPTTNPPIDI HPSNESIDAA RGDVITKPWL PLPLGLKPPS VDGVMTELQR QGIPNVPPIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-15 | 111 | 166 | 2 | 57 | ARR10-B |
5lxu_A | 2e-15 | 119 | 170 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00458.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352633 | 0.0 | AK352633.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-O13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434622.1 | 0.0 | PREDICTED: transcription activator GLK2-like | ||||
Refseq | XP_018434634.1 | 0.0 | PREDICTED: transcription activator GLK2-like | ||||
Swissprot | Q9FFH0 | 1e-174 | GLK2_ARATH; Transcription activator GLK2 | ||||
TrEMBL | A0A398AE31 | 0.0 | A0A398AE31_BRACM; Uncharacterized protein | ||||
STRING | Bra036015.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 1e-162 | GOLDEN2-like 2 |