PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00420.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 326aa MW: 36430.1 Da PI: 7.8611 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.9 | 1.7e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i+n+ r+ t+ kR+ g+lKK +E+S+LC++++ ii+s+ Rsa1.0_00420.1_g00008.1 10 FIDNNASRKATYKKRKRGLLKKVHEISTLCGINAGAIIYSP 50 89*************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.6E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.086 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.75E-18 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-23 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-14 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MTRKKVKLAF IDNNASRKAT YKKRKRGLLK KVHEISTLCG INAGAIIYSP YDPTPEVWPS 60 VAGMNQMIDA FRNLPEIDRH KNMVNQREFI QQRINKAENL LLKQKKDNRE VNLTEAMYQS 120 LQMGELVIQA RGSSDPAIAR DLNDLGYLVD QFINSLIRRI LILEGGSDME IGESSNAAAA 180 TAHDPSEPVR TLALVEGATA PATTVHGQQF YQPYAPYSLG FYEQARNQDQ SMEMMNRPMH 240 MGYAANQMGF PFMDNTHHYH HKPHWFLGDT STAPQQQQLF PGESSTAPQP QQLFPGESSA 300 APPPATSGSD PSAATTPNPT NNIWFR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFIDNNASRKATYKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00420.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455838.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 5e-62 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A3P5ZG07 | 1e-127 | A0A3P5ZG07_BRACM; Uncharacterized protein | ||||
STRING | Bo5g145000.1 | 1e-123 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 5e-64 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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