PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00404.1_g00018.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 271aa    MW: 30788.5 Da    PI: 8.0145
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00404.1_g00018.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA65.46.2e-21190224135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C ttkTp+WR+gpdg+ktLCnaCG+++r+ +l
  Rsa1.0_00404.1_g00018.1 190 CTHCETTKTPQWREGPDGPKTLCNACGVRFRSGRL 224
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-20184234IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.04E-15188247No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15188221IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.202188220IPR000679Zinc finger, GATA-type
CDDcd002021.30E-17189236No hitNo description
PfamPF003209.5E-19190224IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSWFPEEEFK GLSDSFFDDI INHINFPLED TTTGEGGEDW DSKFQHLEPP PMDLFTTFPS  60
EFTSYHVTNK EVAPVPLLEQ SSTLQQSSSP PDIKVSKLFQ SSSPVSVLES SDASFSPQNL  120
ISQSLTFPVK GMRSKRKRRP TTHRFRYLHP FEPRKLETTY YSSEQQAKKK RKTSSLHTEA  180
SSYDGIVRKC THCETTKTPQ WREGPDGPKT LCNACGVRFR SGRLVPEYRP ASSPTFVPSL  240
HSNSHRKIIE MRRKEGDEFD ASMIQSVISG A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00404.1_g00018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485655.10.0PREDICTED: GATA transcription factor 11-like isoform X1
SwissprotQ6DBP81e-119GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A3N6RV171e-154A0A3N6RV17_BRACR; Uncharacterized protein
STRINGBo8g112710.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-104GATA transcription factor 11