PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00382.1_g00027.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 451aa    MW: 50627.9 Da    PI: 6.3585
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00382.1_g00027.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.33.9e-12432735
                     GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             t TplWR+gp  ++ LCnaCG ++r kg+
  Rsa1.0_00382.1_g00027.1  4 TGTPLWRNGPPEKPVLCNACGSRWRTKGS 32
                             67********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.66E-6437No hitNo description
Gene3DG3DSA:3.30.50.101.8E-8431IPR013088Zinc finger, NHR/GATA-type
SMARTSM004010.0017446IPR000679Zinc finger, GATA-type
PfamPF003206.8E-10432IPR000679Zinc finger, GATA-type
CDDcd002028.57E-11645No hitNo description
PfamPF139193.7E-7236304IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLLTGTPLWR NGPPEKPVLC NACGSRWRTK GSLVNYTPLH SRADDINDHR APRMMLINGM  60
PLNKKTPKRK PYQENFTVKR TNNGLKKRAL DELEASNRSS SGSVVSNSES CDQSNAWETT  120
FPCKKRTCVL GRPKAASSVE KLTKDLYSIL QEQQSSCLSG TSEEDLLYEN ESPMVIGHGS  180
VLLRDPHEET EASSLLVDSS RSSSIRSAEF VVKRGQRSLN FGCRTKSQVS GRHGLPLCNI  240
DLKDVFNYDE FIENFTKEEQ QKLMKLLPQV DSVDLPDSVR SMFECSQFRE NFSLFQQLVA  300
DGVFETCSPS FSSSGSDFKT LAKLALSDPN KSHLLETYHM LKEQRKGIED SVTKPSDNHS  360
LVTIERPCES LNQNFLETRA VMKSPKEVMK ISSKHMETNE TIENSVSSFN QMSYGGSMAF  420
SYEDNDISDQ DLLLDVPSNG SYPQAELLHM I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00382.1_g00027.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892610.0AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478684.10.0PREDICTED: GATA transcription factor 27-like isoform X1
RefseqXP_018478690.10.0PREDICTED: GATA transcription factor 27-like isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A397Z3Y30.0A0A397Z3Y3_BRACM; Uncharacterized protein
STRINGBo7g077300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27