PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00347.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 360aa    MW: 41708.6 Da    PI: 7.1812
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00347.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1087.1e-34311222102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k++ei+ed+++++++sw++ g+sfvv+d + f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F 
  Rsa1.0_00347.1_g00007.1  31 FLNKTFEIVEDPNTDHIVSWNRGGTSFVVWDLHAFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEGFL 107
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                               g+++ll++ikr++s
  Rsa1.0_00347.1_g00007.1 108 LGQRHLLKTIKRRAS 122
                              ************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-5427120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-3327120IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3527120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-2931120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNPFLHHPEG DPPQSPPKPI EGLHEIGPPP FLNKTFEIVE DPNTDHIVSW NRGGTSFVVW  60
DLHAFSEFLL PRHFKHSNFS SFIRQLNTYG FRKIEAERWE FANEGFLLGQ RHLLKTIKRR  120
ASFASTSSSP IHDPCVELRK EKQLLLTEVE ILRQQQQTAR SYIKAMKQRI EGAEKKQREM  180
MSFLARAVQS PSLYQFLKQR DARVKDLEAE EEERGRGSSV SELEALALEM QGYGKQRKAK  240
EEEDMVIERE LDDGFWEELL GRVDKFSRVS NHEIIFQVCE SEPLMVFFHW ILGLCTVPRA  300
FSKNQESKVI QSPTDKEGYP HFCPKVSPCI PHLSSSPPRT LYPISFPRPQ PVFWMTSSTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212912518125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00347.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484581.10.0PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_018484610.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9SV121e-132HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A0D3DE301e-157A0A0D3DE30_BRAOL; Uncharacterized protein
STRINGBo7g101300.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-126heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]