PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00347.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 268aa    MW: 31013.1 Da    PI: 5.4723
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00347.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.8e-34281192102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k++ei+ed+++++++sw++ g sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F 
  Rsa1.0_00347.1_g00006.1  28 FLIKTFEIVEDPNTDHIVSWNRGGASFVVWDLHSFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAEK---------WEFANEGFL 104
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                               g+++ll++ikr++s
  Rsa1.0_00347.1_g00006.1 105 SGQRHLLKNIKRRAS 119
                              ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3624117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5424117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-3324117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2928117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-182851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNPFLNQEDD PPPPKPVEGL HEIGPPPFLI KTFEIVEDPN TDHIVSWNRG GASFVVWDLH  60
SFSEFLLPRH FKHSNFSSFI RQLNTYGFRK IEAEKWEFAN EGFLSGQRHL LKNIKRRASL  120
ASTSSSIQDP CTELRKEKQL LLMELVSLRQ QQQTTKSYIK AMEQRIEGAE EKQRKMMSFL  180
ARAMQNPSFL HQLLKQRDMR VKELEVEAAE RGRGSSVSEL EALALEMQGY GRQRNVKEEE  240
DMVVERELDD GFWEELLSDE SLASTSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-232612218125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00347.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481125.10.0PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_018481492.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9SV121e-146HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A3P6E6661e-179A0A3P6E666_BRAOL; Uncharacterized protein
STRINGBo7g101300.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-148heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]