PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00326.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 22726.3 Da PI: 6.8051 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.8e-20 | 134 | 184 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Rsa1.0_00326.1_g00019.1 134 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDKAAFRMRG 184 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.73E-32 | 133 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-33 | 133 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.302 | 134 | 192 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-14 | 134 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-23 | 134 | 193 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-40 | 134 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 135 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 158 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAIESDYAFL ESIRRQLLEE SELRLSESTV AISGTGTTVH SVKPVYGRNS SFSKLYPCFS 60 DSWGDLPLKE NDSEDMLVYG ILNDAFHGGW EPSSSSSDED RSSLTTVKTE NFSAVDSVPA 120 KKTSPVQAPA KGKHYRGVRQ RPWGKFAAEI RDPAKNGARV WLGTFETAED AALAYDKAAF 180 RMRGSRALLN FPSRVNSGEP DPVRIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-44 | 130 | 199 | 1 | 70 | ATERF1 |
3gcc_A | 8e-44 | 130 | 199 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00326.1_g00019.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467040.1 | 1e-149 | PREDICTED: ethylene-responsive transcription factor 1A-like | ||||
Swissprot | O80337 | 1e-109 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | A0A3P6FNP6 | 1e-127 | A0A3P6FNP6_BRAOL; Uncharacterized protein | ||||
STRING | Bra040159.1-P | 1e-127 | (Brassica rapa) | ||||
STRING | Bo1g017590.1 | 1e-127 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 4e-88 | ethylene responsive element binding factor 1 |
Publications ? help Back to Top | |||
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