PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00325.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 312aa    MW: 35953.1 Da    PI: 5.9076
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00325.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31176231156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              k+r++W+++LH+rF++a+++LGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  Rsa1.0_00325.1_g00004.1 176 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHLQKYRLH 231
                              79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.445173233IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-27174234IPR009057Homeodomain-like
SuperFamilySSF466898.96E-17174234IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-28176231IPR006447Myb domain, plants
PfamPF002498.0E-6178229IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MIKKLSIMDY NRERCGQYIE TLEEERRKIL VFQRELPLCL DLVTQAIERC KREITETGTY  60
NVYGQSECSE QTTGQCTPVL EQFFNIKDSS TSNEEEVEEE LEDEQGNHDP ENDSEDKNMK  120
SDWLKSVQLW NQPDPLLPKE EQSQQMMETV VKRDESMRED PMANSGERRR RETERKQRRC  180
WSSQLHRRFL NALQHLGGPH VATPKQIREF MKVDGLTNDE VKSHLQKYRL HTRRPSQTVP  240
NNGNSQKQHF VVVGGLWVPQ SDYSTGKTTR GATTSGTTTT TTTTAGIYGA MAAPPAPQWP  300
SHFNFTPSII VE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERRRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00325.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646506.10.0transcription factor HRS1-like
SwissprotQ9FX671e-162HRS1_ARATH; Transcription factor HRS1
TrEMBLA0A0D3C9F20.0A0A0D3C9F2_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QWF10.0A0A3N6QWF1_BRACR; Uncharacterized protein
TrEMBLA0A3P6F9U90.0A0A3P6F9U9_BRAOL; Uncharacterized protein
STRINGBo5g015170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135081728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.11e-149G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  2. Kiba T, et al.
    Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily.
    Plant Cell, 2018. 30(4): p. 925-945
    [PMID:29622567]