PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00320.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 368aa    MW: 40831.4 Da    PI: 7.8219
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00320.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-0780105127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ykt+ C  f + GtC  Gd C+FaHg+
  Rsa1.0_00320.1_g00006.1  80 YKTRMCAKFKA-GTCMNGDPCNFAHGM 105
                              9**********.*************95 PP
2zf-CCCH17.95.4e-061751891125
                              GTS.--TTTTT-SS-S CS
                  zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                                G +C+yGdrC+F H
  Rsa1.0_00320.1_g00006.1 175 F-GdECPYGDRCNFVH 189
                              4.559*********** PP
3zf-CCCH36.95.9e-12255280127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +kt+lC+ f   G+C++Gd+C+FaHg+
  Rsa1.0_00320.1_g00006.1 255 WKTRLCMKFEN-GQCPFGDNCHFAHGQ 280
                              8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-878110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1478112IPR000571Zinc finger, CCCH-type
SMARTSM003560.005179105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.06179106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6164190IPR000571Zinc finger, CCCH-type
SMARTSM003560.022164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.042164192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-7166190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8252283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-14253283IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7254280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901254281IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9255280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPWKTN DSMPYPMMMN NEQSESQSQP SLKRPRLNDD TTTSNNNSWM  60
APPSSNTPPM VNRGTAKIFY KTRMCAKFKA GTCMNGDPCN FAHGMEDLRQ PPSNWQEIVG  120
PPPVGDRGRE RERERERPSS SSSVSATNNN NNNNNNWEDD QKIILRMKLC RKFCFGDECP  180
YGDRCNFVHE DLSKFREESG KLRECSVISV GTTDPLSVEN GGSAASHQVD VNRRGGVPVP  240
APLNNGGGGV KTVYWKTRLC MKFENGQCPF GDNCHFAHGQ AELLRHSVGN GEAVNAVGSL  300
SKQTVGSTNE AFAMKPNAAQ VDSSGLNDEG RREKCLLKWS DSKKINRIYG DWIDDLPVGQ  360
KSTKPVES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126136RGRERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00320.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436880.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-166C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D3ACC30.0A0A0D3ACC3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G3E60.0A0A3P6G3E6_BRAOL; Uncharacterized protein
STRINGBo1g114770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-153C3H family protein