PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00317.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 341aa    MW: 38443.2 Da    PI: 8.4964
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00317.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.6e-171051243
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                             +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ 
  Rsa1.0_00317.1_g00004.1 10 FIANDSSRKATFKKRKKGLIKKVNELSTLCGINACAIIYSPY 51
                             899*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.058149IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-24160IPR002100Transcription factor, MADS-box
CDDcd002666.70E-24285No hitNo description
SuperFamilySSF554553.4E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTRKKVKLAF IANDSSRKAT FKKRKKGLIK KVNELSTLCG INACAIIYSP YDTNPEVWPS  60
NSGVQRIISD FRKLPEMDQN KKMVDQETFL RQRIAKASDN LKKQRKDNRE MEMTEVMFQC  120
LVGNMGMFNL NIMDLNDLGY MIDQYLKDVS RRIEILGSSG GMELGESSNA AAASPSETAG  180
TLAIVPTATA AIQPHHHHQQ QQQFRHHAAP HVGHYEQPLN LNLSHNQNQQ QWFTEMMMNH  240
PEQMNYAAEQ MGFPFMNDNR HHHQQQQIPG ESSSTPATNV SASSANPVTT EQMGFPFMND  300
NRHHHHQQIP GESSSTPATN VSASSANPVT SSNPTNNIWF R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIANDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00317.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454705.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-110AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078J7381e-166A0A078J738_BRANA; BnaAnng16690D protein
TrEMBLA0A0D3E8D31e-166A0A0D3E8D3_BRAOL; Uncharacterized protein
TrEMBLA0A397XW251e-166A0A397XW25_BRACM; Uncharacterized protein
TrEMBLA0A3P6E9T61e-166A0A3P6E9T6_BRAOL; Uncharacterized protein
TrEMBLM4EL021e-166M4EL02_BRARP; Uncharacterized protein
STRINGBra029469.1-P1e-167(Brassica rapa)
STRINGBo9g078450.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-89AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]