PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00307.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 296aa    MW: 32508.6 Da    PI: 10.5998
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00307.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA72.96.8e-23177228158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep++VNaKQyq+Il+RRq+Rakle+++kl ++ rk     SRh hAl+R+RgsgGrF
  Rsa1.0_00307.1_g00009.1 177 NEPVFVNAKQYQAILRRRQRRAKLEAQNKL-IRVRK-----SRHLHALKRARGSGGRF 228
                              59****************************.77776.....9***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-26175231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115226.042176231IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-18178228IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860181201IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQEFHSKDSL SSPTTSWGKS MFTNSNVQGS SSSSMTDNNN NNTLSLMTME MMSTHFPGMK  60
QTGFQLQGHD DSSSTQSTGG ESFGDVASLG GHNSNRCGHN FVTHLSGYPC GSHPKPIVSK  120
VSQNSVVPPA IEASWSLHGN GFMSFPYASQ HTVLQHPQTG ELMVPSRMLL PHNIPENEPV  180
FVNAKQYQAI LRRRQRRAKL EAQNKLIRVR KSRHLHALKR ARGSGGRFLN TKKLQESKSP  240
PSLAKSVKLR QVDILGLVAV GSSGPDLTGN NNDMFQQDPQ LRFSGYPSNH HVSVLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-13178240367NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191198RRRQRRAK
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00307.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463104.10.0PREDICTED: nuclear transcription factor Y subunit A-6
RefseqXP_018463105.10.0PREDICTED: nuclear transcription factor Y subunit A-6
SwissprotQ9LVJ71e-119NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLA0A078HND21e-170A0A078HND2_BRANA; BnaA01g29650D protein
TrEMBLA0A398AUR31e-170A0A398AUR3_BRACM; Uncharacterized protein
TrEMBLM4DYD11e-170M4DYD1_BRARP; Uncharacterized protein
STRINGBra021527.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147331620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-113nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]