PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00296.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 420aa MW: 46130.1 Da PI: 9.7858 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98 | 6e-31 | 156 | 212 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers +++ ei+Y+geHnh+k Rsa1.0_00296.1_g00006.1 156 DGYNWRKYGQKQVKGSDCPRSYYKCTHPKCPVKKKVERSM-GGQASEIVYQGEHNHSK 212 9***************************************.***************85 PP | |||||||
2 | WRKY | 102.9 | 1.8e-32 | 340 | 397 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+ Rsa1.0_00296.1_g00006.1 340 EDGFRWRKYGQKVVGGNAHPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 397 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-27 | 147 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-32 | 154 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-24 | 155 | 213 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.607 | 156 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-24 | 156 | 210 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-32 | 328 | 397 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.766 | 334 | 399 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-27 | 335 | 397 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-38 | 339 | 398 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-26 | 340 | 397 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MEVKESERVV IAKPIASRPS CSSIRTFTDL LTDSVTISPH EAVDVAAIRP KTLRFKQPAV 60 ASVSYPPVDG KDKGKSCDDS DSKSYVVYKP KAKLVSQATV SALANMGSRQ QVWRQSEAIS 120 SYGKSGSQGR SGPNLVPRVP SFNESETSSG DRSSVDGYNW RKYGQKQVKG SDCPRSYYKC 180 THPKCPVKKK VERSMGGQAS EIVYQGEHNH SKPSCPLPRR ASSSSSSGLQ KPQRELASER 240 SIGQDPNSVY YHPLWSTQSS DSSKSITERM NEGCVITPFE FAVPRPANSS GGTSDSGCRS 300 SSQCDEGELD DPSRNKRRKN EKQASQTGVS QSSGESDSLE DGFRWRKYGQ KVVGGNAHPR 360 SYYRCTSANC RARKHVERAS DDPRAFITTY EGKHNHHLHL RPPTSPALPF TSTQHSNQAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-28 | 156 | 398 | 9 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-28 | 156 | 398 | 9 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00296.1_g00006.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ012168 | 0.0 | FJ012168.1 Brassica napus WRKY44 transcription factor (WRKY44) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474900.1 | 0.0 | PREDICTED: WRKY transcription factor 44-like isoform X2 | ||||
Swissprot | Q9ZUU0 | 0.0 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | A0A0B4UHS7 | 0.0 | A0A0B4UHS7_BRANA; WRKY44 | ||||
STRING | Bra023112.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8362 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 0.0 | WRKY family protein |