PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00295.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 23292.7 Da PI: 4.3051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.9 | 2.3e-11 | 26 | 99 | 4 | 69 |
NAM 4 GfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya 69 G+ F+P+d+el++ +L +k+e+ + +e++i+ ++y+ ePw L++ +++ +++ew++F++r++ + Rsa1.0_00295.1_g00016.1 26 GIYFNPEDQELIKLHLLPKLETYRkpkskdKACEDFIEMKNVYDREPWLLDH-TNHplfRKNEWFYFVTRSQVSV 99 99*****************998886666544455689999**********84.222345889*****99988654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-10 | 25 | 97 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-5 | 26 | 98 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSDNYEDGGV YFDPDENMFN NDEDGGIYFN PEDQELIKLH LLPKLETYRK PKSKDKACED 60 FIEMKNVYDR EPWLLDHTNH PLFRKNEWFY FVTRSQVSVK NIGRAPSSLE HQQPLLCHRG 120 EANMVHQKED TSAVIQMVPR RSSHQDEHVG AMEVTHNVEE EDWIGDLFDK FASTGLDDQQ 180 QTPMYAASLP IEVDDDDVEV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00295.1_g00016.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013704002.1 | 2e-73 | NAC domain-containing protein 96-like | ||||
TrEMBL | A0A3P6DJU5 | 3e-71 | A0A3P6DJU5_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo2g027140.1 | 2e-71 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2607 | 13 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 1e-12 | NAC domain containing protein 88 |