PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G18300.1 | ||||||||
Common Name | anac088, NAC088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 147aa MW: 17549.8 Da PI: 5.3717 | ||||||||
Description | NAC domain containing protein 88 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.3 | 7.3e-24 | 17 | 132 | 4 | 127 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 +frF+P++eel+ +yL +k+ ++ ++ +++ +iy ePw+L+++ ++ e +ew++F+kr +nr++k Wkatg+ k+v+sk + AT5G18300.1 17 CFRFNPSEEELILDYLLPKLGFHQPNTIYLLEDRdNIYAKEPWRLNHT-ENdifEPNEWFYFVKR---------TNRKVK--GWKATGELKDVVSKkT 102 69*******************999888566888768*********842.2224467799999985.........667655..4**********99878 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 ge++g k+ L fy + +++ + W+m ey+ AT5G18300.1 103 GEVIGKKRNLRFY-VEGDESKTSGWTMREYS 132 899**********.555556799*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-28 | 3 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.584 | 14 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-15 | 18 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MMPMTEEFYD EEEELGCFRF NPSEEELILD YLLPKLGFHQ PNTIYLLEDR DNIYAKEPWR 60 LNHTENDIFE PNEWFYFVKR TNRKVKGWKA TGELKDVVSK KTGEVIGKKR NLRFYVEGDE 120 SKTSGWTMRE YSSIGNQNQR LCHLKGP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18418575 | 0.0 | ||||
Expression Atlas | AT5G18300 | - | ||||
AtGenExpress | AT5G18300 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G18300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G18300 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB012246 | 0.0 | AB012246.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7. | |||
GenBank | AC051626 | 0.0 | AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence. | |||
GenBank | BT029319 | 0.0 | BT029319.1 Arabidopsis thaliana At5g18300 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197331.1 | 1e-107 | NAC domain containing protein 88 | ||||
TrEMBL | Q9FK42 | 1e-105 | Q9FK42_ARATH; At5g18300 | ||||
STRING | AT5G18300.1 | 1e-106 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Link Out ? help Back to Top | |
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Phytozome | AT5G18300.1 |
Entrez Gene | 831948 |
iHOP | AT5G18300 |
wikigenes | AT5G18300 |
Publications ? help Back to Top | |||
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