PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00293.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 141aa    MW: 16215.7 Da    PI: 8.4773
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00293.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.5e-141058250
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             +i +++ r+ +f kR++gi+KK +EL +LC+++++ ++ s +++  e+s
  Rsa1.0_00293.1_g00003.1 10 PITDNIARNQSFKKRKKGIIKKVNELATLCGVKACAVVNSCDNTEPEFS 58
                             799999**********************************999888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.596161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-16160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-21395IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003198.3E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MPRGKLKLEP ITDNIARNQS FKKRKKGIIK KVNELATLCG VKACAVVNSC DNTEPEFSPS  60
KEGAREVCLK FLNVLPEQRY KKMYDQERYL WERIQKGREK LMRIDEENRE IEVQEMPVTT  120
TTTAAPAADL SDHSIDNKCL D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00293.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454230.12e-65PREDICTED: agamous-like MADS-box protein AGL36
RefseqXP_018454231.12e-65PREDICTED: agamous-like MADS-box protein AGL36
SwissprotQ7XJK61e-27AGL36_ARATH; Agamous-like MADS-box protein AGL36
TrEMBLA0A3P6B0221e-47A0A3P6B022_BRACM; Uncharacterized protein
STRINGBra020552.1-P4e-47(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.14e-24AGAMOUS-like 36
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]