PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00279.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 370aa    MW: 41997.3 Da    PI: 9.1215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00279.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.5e-222671651
                             HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +s r ++++kR+ +++KKA+ELS+LC++ev+vi+++s g+l+++++
  Rsa1.0_00279.1_g00020.1 26 SSLRATSLAKRQVTVFKKAQELSILCGIEVCVIYYGSGGELKTWPK 71
                             789*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-61272IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-1725104IPR002100Transcription factor, MADS-box
PfamPF003191.8E-132769IPR002100Transcription factor, MADS-box
CDDcd002663.33E-162993No hitNo description
PROSITE profilePS5006612.3062973IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSSSSLSCLP SSSSSRIRQT LVQKTSSLRA TSLAKRQVTV FKKAQELSIL CGIEVCVIYY  60
GSGGELKTWP KDREKVKDMA RRYIQLSDVK RRKGQDDLDQ FLKKIDKDDS KNNNKKKKVK  120
LGSSCKYPDW DPRFDHCSVE QLTDLIQSLE CTQTKLQHRI RGLVESQRQR NVHYTNMAGQ  180
EQMITTTTTP RMKHLQQHSN QVSMDMYNHG ISTLPQLPST SAFNQAQSLA PIPNSLAMHQ  240
NPNMGSYSRL LGVQESGLDE ILSMNMLPYN SINTNCANVF PNLFQQNCYN MEDYSGFLGP  300
QETSINNMNG EDYSGLLWTQ GTGTNVDMFG YNNNINNPNG FSQQFVQYPT QRAPPGFQYM  360
DRSTQSVRPF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00279.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487580.10.0PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-100AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A3P5Z8I50.0A0A3P5Z8I5_BRACM; Uncharacterized protein
STRINGBra022341.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.14e-96AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]