PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00273.1_g00045.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 205aa MW: 22862.4 Da PI: 10.0479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00273.1_g00045.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	56	77	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk F ++ L H++ H Rsa1.0_00273.1_g00045.1 56 ECQYCGKEFANSQALGGHQNAH 77 7******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.5E-5	53	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.6E-6	53	82	No hit	No description
PROSITE profile	PS50157	11.801	55	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009736	Biological Process	cytokinin-activated signaling pathway
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010026	Biological Process	trichome differentiation
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSRTGESSSG SSSDKTIKLF GFELISGGNR SPDVTTADSV SSSTKKTTSF TAKRLECQYC 60 GKEFANSQAL GGHQNAHKKE RLKKKRLQLQ ARRASIGYYL TSHQQPITTS FQRQYKTPSY 120 CAFSSMHLNN QMGLFNEEWS SMSSQISFGN KDTSQDFSEQ NGEMGKMYGA RQNMIQFQRD 180 LTSRSDSKRS INPLDLHLGF AGDTA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269\|PubMed:21803862, ECO:0000269\|PubMed:22301962, ECO:0000269\|PubMed:22762888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00273.1_g00045.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin and ethylene. {ECO:0000269\|PubMed:22762888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437122.1	1e-151	PREDICTED: zinc finger protein 5-like
Swissprot	Q39264	1e-105	ZFP5_ARATH; Zinc finger protein 5
TrEMBL	A0A078G5K1	1e-119	A0A078G5K1_BRANA; BnaC08g14290D protein
TrEMBL	A0A0D3DNX4	1e-119	A0A0D3DNX4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FS24	1e-119	A0A3P6FS24_BRAOL; Uncharacterized protein
STRING	Bo8g059420.1	1e-120	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7325	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	3e-92	zinc finger protein 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Savage LJ,Imre KM,Hall DA,Last RL Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins. PLoS ONE, 2013. 8(9): p. e73291 [PMID:24023856] Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859] Yu D, et al. RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis. Plant Physiol. Biochem., 2015. 88: p. 82-8 [PMID:25676129] Kim SY,Hyoung S,So WM,Shin JS The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling. Plant Mol. Biol., 2018. 96(3): p. 315-326 [PMID:29335898]